Matlab Index

Matlab Directories

Matlab Files found in these Directories

BatchSuperSeggerDebug	gateTool	makeConsensusKymo	splitAreaErrors
BatchSuperSeggerOpti	gateToolGui	makeFrameMosaic	splitAtBestSeg
MakeFileName	getBB	makeFrameStripeMosaic	ssoSegFun
ReadFileName	getBBpad	makeKymoMosaic	ssoSegFunPerReg
addBB	getCellFiles	makeKymographC	superSeggerGui
ag	getConstantsList	makeLineage	superSeggerOpti
agd	getInfoScores	makeRegSize	superSeggerViewer
calculateStateEnergy	getPadSize	makeRegionAxisFast	superSeggerViewerGui
cellprops3	getPoleSign	makeRegionSize	systematic
cellprops5	getRGBColor	makeTowerCons	tight_subplot
checkToolboxes	getRegNames3	makeTrainingData	toMakeCell
cleanSuperSegger	getSegInfoNames	makehotcold	towerMergeImages
col	grabClistIndex	makenat	trackOpti
colorize	hotcold	markDivisionEvent	trackOptiAlignPad
comp	hotcoldinv	merge2Regions	trackOptiCellFiles
compConn	houseNeuralSimulation	missingSeg2to1	trackOptiCellFluor
compErrInt	imshift	modifyConstValuesGUI	trackOptiCellMarker
continueCellLine	intAlignIm	multiAssignmentFastOnlyOverlap	trackOptiClist
convertImageNames	intCellFit	multiAssignmentSparse	trackOptiCropMulti
convertToMonochromatic	intFindFociCurve	neuralNetTrain	trackOptiFindFoci
createNewCell	intLoadDataViewer	perRegionOpti	trackOptiFluor
curveFilter	intMakeRegs	plot2ClistsGui	trackOptiGateCellFiles
defineGoodSegs	intRemoveFalseMicroCol	plotClist3D	trackOptiGetErrorListDisk
deleteRegions	intShiftIm	printError	trackOptiLinkCellMulti
dftregistration	isFocus	processExp	trackOptiListNeighbor
displayMap	isRightNameFormat	regionOpti	trackOptiMakeCell
doColorMap	isnat	removeDebris	trackOptiNeighbors
doSeg	isnum	row	trackOptiPD
drill	killRegionsGUI	scoreNeuralNet	trackOptiSkipMerge
editSegmentsGui	lassoScore	segInfoCurv	trackOptiStripSmall
errorRez	lassoglm	segInfoL2	trainLasso
errorRezNew	loadCellData	segsTLEdit	trainTree
fixDir	loadConstants	shouldUseErrorFiles	trainingGui
fixFlags	magicContrast	showCellOutline	treeScore
gate	makeBadRegions	showSegData	tryDifferentConstants
gateHist	makeBgMask	showSegDataPhase	updateRegionFields
gateHistDen	makeCellMovie	showSegRule	updateScores
gateHistDot	makeColonyDist	showSegRuleGUI	updateTrainingImage
gateMake	makeConsensusArray	showSeggerImage	watershedNoise
gateStrip	makeConsensusImage	simAnnealMap