isRightNameFormat

 isRightNameFormat : returns true if .tif images in the directory have the
 right naming convention.
 INPUT : 
       dirname : directory name with images
 OUTPUT :
       rightNames : true if they have the right naming convention


 Copyright (C) 2016 Wiggins Lab 
 Written by Stella Stylianidou.
 University of Washington, 2016
 This file is part of SuperSegger.
 
 SuperSegger is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.
 
 SuperSegger is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 
 You should have received a copy of the GNU General Public License
 along with SuperSegger.  If not, see <http://www.gnu.org/licenses/>.

0001 function [rightNames] = isRightNameFormat(dirname)
0002 % isRightNameFormat : returns true if .tif images in the directory have the
0003 % right naming convention.
0004 % INPUT :
0005 %       dirname : directory name with images
0006 % OUTPUT :
0007 %       rightNames : true if they have the right naming convention
0008 %
0009 %
0010 % Copyright (C) 2016 Wiggins Lab
0011 % Written by Stella Stylianidou.
0012 % University of Washington, 2016
0013 % This file is part of SuperSegger.
0014 %
0015 % SuperSegger is free software: you can redistribute it and/or modify
0016 % it under the terms of the GNU General Public License as published by
0017 % the Free Software Foundation, either version 3 of the License, or
0018 % (at your option) any later version.
0019 %
0020 % SuperSegger is distributed in the hope that it will be useful,
0021 % but WITHOUT ANY WARRANTY; without even the implied warranty of
0022 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
0023 % GNU General Public License for more details.
0024 %
0025 % You should have received a copy of the GNU General Public License
0026 % along with SuperSegger.  If not, see <http://www.gnu.org/licenses/>.
0027 
0028 
0029 contents = dir([dirname,filesep,'*.tif']);
0030 filenames = {contents.name}';
0031 
0032 nameWithXy=regexpi(filenames,'t\d+xy\d+c\d+.tif','once');
0033 nameWithoutXy=regexpi(filenames,'t\d+c\d+.tif','once');
0034 nameWithoutt=regexpi(filenames,'xy\d+c\d+.tif','once');
0035 
0036 numWithXy =  sum(~cellfun('isempty',nameWithXy));
0037 numWithoutXY = sum(~cellfun('isempty',nameWithoutXy));
0038 numWithoutt = sum(~cellfun('isempty',nameWithoutt));
0039 
0040 if numWithXy>0 ||numWithoutXY>0 || numWithoutt>0
0041     rightNames = true;
0042 else
0043     rightNames = false;
0044 end
0045 
0046 end
0047