 BatchSuperSeggerDebug | BatchSuperSeggerOpti : runs everything from start to finish, |
| BatchSuperSeggerOpti | BatchSuperSeggerOpti : runs everything from start to finish, |
| MakeFileName | MakeFileName : converts from nameInfo structure to the image filename. |
| ReadFileName | ReadFileName : extracts the numbers after t,x,y,z in a string *t*c*xy*z* |
| cleanSuperSegger | cleanSuperSegger : used to clean up the flag files created during |
| compErrInt | compErrInt : Computes the error of alignment between two fourier transformed images |
| convertImageNames | convertImageNames : Convert image names from to NIS Elements format |
| processExp | processExp : main function for running the segmentation software. |
| superSeggerGui | superSeggerGui : gui for segmenting images with superSegger. |
| trackOptiAlignPad | trackOptiAlignPad : aligns phase images to correct for microscope drift. |
| trackOptiCropMulti | trackOptiCropMulti : user chooses two corners to crops multiple images |
| trackOptiPD | trackOptiPD : Sets up directories and moves files for SuperSeggerOpti. |
| trackOptiSkipMerge | trackOptiSkipMerge : adds skipped frames back into the time series. |
| tryDifferentConstants | tryDifferentConstants : displays images of cells segmented with |
Master index