Master index

Index for SuperSegger/frameLink

Index for SuperSegger/frameLink

Matlab files in this directory:

continueCellLine	continueCellLine : continues a cell line with the same id.
createNewCell	createNewCell : starts a new cell line with cell id : cell_count + 1.
deleteRegions	deleteRegions : deletes regions in list_c from mask in data.
displayMap	intDisplay : displays linking - used for debugging.
errorRez	errorRez : links cells from the frame before to the current and attempts to
errorRezNew	errorRezNew : links cells from the frame before to the current and attempts to
markDivisionEvent	markDivisionEvent : marks a division event from regR to sister 1 and 2.
merge2Regions	merge2Regions : merges reg1 and reg2 into one in the mask_cell
missingSeg2to1	missingSeg2to1 : finds missing segment in regC.
multiAssignmentFastOnlyOverlap	multiAssignmentPairs : links regions in data_c to regions in data_f.
multiAssignmentSparse	multiAssignmentSparse : assigns regions in data_c to regions in data_f.
splitAreaErrors	splitAreaErrors : splits cells with large area error.
splitAtBestSeg	missingSeg2to1 : finds missing segment in regC.
trackOpti	trackOpti : calls the rest of the functions for segmentation
trackOptiCellMarker	trackOptiCellMarker : puts together a list of complete cell cycles.
trackOptiGetErrorListDisk	trackOptiGetErrorListDisk : creates a list of errors
trackOptiLinkCellMulti	trackOptiLinkCellMulti : links the cells frame-to-frame and resolves errors.
trackOptiNeighbors	trackOptiNeighbors : finds the neighbors for region ii
trackOptiStripSmall	trackOptiStripSmall : removes small regions and fills holes in the regions.
updateRegionFields	updateRegionFields: computes the reg fields in the seg and err data structure.