updateTrainingImage : user can click on segments or regions to change score
from 0 to 1 or vice versa. It updates scores, cell mask, good and bad
segs.
INPUT :
data : data file with segments to be modified
FLAGS : im_flag = 1 for segments, 2 for regions.
INPUT :
data : data file with modified segments
touch_list : list with modified segments/regions
Copyright (C) 2016 Wiggins Lab
Written by Paul Wiggins, Stella Stylianidou.
University of Washington, 2016
This file is part of SuperSegger.
SuperSegger is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
SuperSegger is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with SuperSegger. If not, see <http://www.gnu.org/licenses/>.0001 function [data,touch_list] = updateTrainingImage (data, FLAGS, x) 0002 % updateTrainingImage : user can click on segments or regions to change score 0003 % from 0 to 1 or vice versa. It updates scores, cell mask, good and bad 0004 % segs. 0005 % 0006 % INPUT : 0007 % data : data file with segments to be modified 0008 % FLAGS : im_flag = 1 for segments, 2 for regions. 0009 % INPUT : 0010 % data : data file with modified segments 0011 % touch_list : list with modified segments/regions 0012 % 0013 % Copyright (C) 2016 Wiggins Lab 0014 % Written by Paul Wiggins, Stella Stylianidou. 0015 % University of Washington, 2016 0016 % This file is part of SuperSegger. 0017 % 0018 % SuperSegger is free software: you can redistribute it and/or modify 0019 % it under the terms of the GNU General Public License as published by 0020 % the Free Software Foundation, either version 3 of the License, or 0021 % (at your option) any later version. 0022 % 0023 % SuperSegger is distributed in the hope that it will be useful, 0024 % but WITHOUT ANY WARRANTY; without even the implied warranty of 0025 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 0026 % GNU General Public License for more details. 0027 % 0028 % You should have received a copy of the GNU General Public License 0029 % along with SuperSegger. If not, see <http://www.gnu.org/licenses/>. 0030 0031 im_flag = FLAGS.im_flag ; 0032 touch_list = []; 0033 ss = size(data.phase); 0034 0035 x = round(x); 0036 0037 if ~isempty(x) 0038 % creates an image of 51 x 51 of gaussian like point 0039 tmp = zeros([51,51]); 0040 tmp(26,26) = 1; 0041 tmp = 8000-double(bwdist(tmp)); 0042 0043 rmin = max([1,x(2)-25]); 0044 rmax = min([ss(1),x(2)+25]); 0045 0046 cmin = max([1,x(1)-25]); 0047 cmax = min([ss(2),x(1)+25]); 0048 0049 rrind = rmin:rmax; 0050 ccind = cmin:cmax; 0051 0052 pointSize = [numel(rrind),numel(ccind)]; 0053 0054 0055 if im_flag == 1 0056 0057 segs = data.segs.segs_good(rrind,ccind) + ... 0058 data.segs.segs_bad(rrind,ccind); 0059 segs = segs>0; 0060 tmp = tmp(26-x(2)+rrind,26-x(1)+ccind).*segs ; 0061 0062 [~,ind] = max( tmp(:) ); 0063 0064 % indices in point image for max / closest segment 0065 [sub1, sub2] = ind2sub( pointSize, ind ); 0066 0067 % closest segments id 0068 ii = data.segs.segs_label(rmin+sub1-1,cmin+sub2-1); 0069 0070 if ii ~=0 0071 0072 % xx and yy are the segments coordinates 0073 [xx,yy] = getBB( data.segs.props(ii).BoundingBox ); 0074 0075 if data.segs.score(ii) % score is 1 0076 data.segs.score(ii) = 0; % set to 0 0077 data.segs.segs_good(yy,xx) ... 0078 = double(~~(data.segs.segs_good(yy,xx)... 0079 - double(data.segs.segs_label(yy,xx)==ii))); 0080 data.segs.segs_bad(yy,xx) = ... 0081 double(~~(data.segs.segs_bad(yy,xx)... 0082 +double(data.segs.segs_label(yy,xx)==ii))); 0083 else 0084 data.segs.score(ii) = 1; 0085 data.segs.segs_good(yy,xx) = ... 0086 double(~~(data.segs.segs_good(yy,xx)+... 0087 double(data.segs.segs_label(yy,xx)==ii))); 0088 data.segs.segs_bad(yy,xx) = ... 0089 double(~~(data.segs.segs_bad(yy,xx)-... 0090 double(data.segs.segs_label(yy,xx)==ii))); 0091 end 0092 0093 % updates cell mask 0094 data.mask_cell = double((data.mask_bg - data.segs.segs_good - data.segs.segs_3n)>0); 0095 data.regs.regs_label = bwlabel(data.mask_cell); 0096 touch_list = [touch_list, ii]; 0097 end 0098 elseif im_flag == 2 0099 tmp = tmp(26-x(2)+rrind,26-x(1)+ccind).*data.mask_cell(rrind,ccind); 0100 try 0101 [~,ind] = max( tmp(:) ); 0102 catch ME 0103 printError(ME); 0104 end 0105 0106 [sub1, sub2] = ind2sub( pointSize, ind ); 0107 ii = data.regs.regs_label(sub1-1+rmin,sub2-1+cmin); 0108 plot( sub2-1+cmin, sub1-1+rmin, 'g.' ); 0109 0110 if ii 0111 data.regs.score(ii) = ~data.regs.score(ii); 0112 end 0113 end 0114 end