 colorize | colorize : creates an image, with defined mask, colormap, and background |
| comp | comp : creates composite image |
| doColorMap | doColorMap : Applies colormap to an image. |
| editSegmentsGui | editSegmentsGui : gui used to turn on/off segments |
| fixFlags | fixFlags : fixes and initializes flags for superSeggerViewer. |
| getPadSize | getPadSize : returns how many numbers there are in each cell .mat file. |
| getRGBColor | getRGBColor : returns rgb value of color name. |
| hotcold | hotcold : used for colormaps. |
| hotcoldinv | holdcoldinv : inverts hot to cold in colormap. |
| intCellFit | intCellFit : function used to fit to the shape of the cell. |
| intLoadDataViewer | intLoadDataViewer : used to load data in superSeggerViewer |
| loadCellData | loadCellData : used to load a cell file given it's number |
| makeCellMovie | makeCellMovie : creates a movie for a single cell file |
| makeConsensusArray | makeConsensusArray : Computes consensus dataImArray array used to make |
| makeConsensusImage | makeConsensusImage : Computes consensus fluorescence localization from cells in a cell files |
| makeConsensusKymo | intMakeConsensusKymo : creates a consensus kymograph |
| makeFrameMosaic | makeFrameMosaic: Creates a tower for a single cell. |
| makeFrameStripeMosaic | makeFrameStripeMosaic : Creates a long stripe with all the cell towers. |
| makeKymoMosaic | makeKymoMosaic creates a mosaic kymograph of multiple cells. |
| makeKymographC | makeKymographC : creates a kymograph for given cell data file.. |
| makeLineage | makeLineage : creates a lineage tree for the cells with ID_. |
| makeTowerCons | makeTowerCons : Makes normalized time and shape tower for a single cell. |
| makehotcold | makehotcold : used to create a hotplot |
| plot2ClistsGui | plot2ClistsGui : gui used to plot a dot plot of two values in the clist |
| shouldUseErrorFiles | loadCellData : used to load a cell file given it's number |
| showCellOutline | showCellOutline : draws the outlines for the regions in the data file. |
| showSegData | showSegData : draws the outlines for the regions in the data file. |
| showSegDataPhase | showSegDataPhase : draws the outlines for the regions in the data file. |
| showSeggerImage | showSeggerImage : produces the superSeggerViewer image according to clist and |
| superSeggerViewer | superSeggerViewer : interactive visulization of the segmented data. |
| superSeggerViewerGui | superSeggerViewerGui : gui used to visualize the results of segmentation |
| tight_subplot | tight_subplot : creates "subplot" axes with adjustable gaps and margins |
| towerMergeImages | towerMergeImages : merges the towers of several cells. |
Master index