Description of fixDir

DESCRIPTION

 fixDir : adds a directory separator eg '/' at the end
 of dirname if it doesn't exist
 INPUT :
   dirname : String of directory name
 OUTPUT :
   dirname : String of directory name with '/' at the end

 Copyright (C) 2016 Wiggins Lab
 Written by Paul Wiggins.
 University of Washington, 2016
 This file is part of SuperSegger.

 SuperSegger is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.

 SuperSegger is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.

 You should have received a copy of the GNU General Public License
 along with SuperSegger.  If not, see <http://www.gnu.org/licenses/>.

CROSS-REFERENCE INFORMATION

BatchSuperSeggerDebug BatchSuperSeggerOpti : runs everything from start to finish,

BatchSuperSeggerOpti BatchSuperSeggerOpti : runs everything from start to finish,

cleanSuperSegger cleanSuperSegger : used to clean up the flag files created during

trackOptiAlignPad trackOptiAlignPad : aligns phase images to correct for microscope drift.

trackOptiCropMulti trackOptiCropMulti : user chooses two corners to crops multiple images

trackOptiPD trackOptiPD : Sets up directories and moves files for SuperSeggerOpti.

trackOptiSkipMerge trackOptiSkipMerge : adds skipped frames back into the time series.

tryDifferentConstants tryDifferentConstants : displays images of cells segmented with

trackOptiCellFiles trackOptiCellFiles : organizes the data into the final cell files that

trackOptiClist trackOptiClist : generates an array called the clist

trackOptiListNeighbor trackOptiListNeighbor : creates a neighbors list for each cell.

trackOptiMakeCell trackOptiMakeCell : generates the CellA field indexed by the region number

trackOptiFindFoci trackOptiFindFoci : Finds foci in cells. Note that this only

trackOptiFluor trackOptiFluor calculates the mean background fluorescence for each frame.

trackOpti trackOpti : calls the rest of the functions for segmentation

trackOptiCellMarker trackOptiCellMarker : puts together a list of complete cell cycles.

trackOptiGetErrorListDisk trackOptiGetErrorListDisk : creates a list of errors

trackOptiLinkCellMulti trackOptiLinkCellMulti : links the cells frame-to-frame and resolves errors.

trackOptiStripSmall trackOptiStripSmall : removes small regions and fills holes in the regions.

gateTool gateTool : tool for gating and plotting functionality of clists.

segsTLEdit segsTLEdit : used to visually modify segments in a frame.

getInfoScores getInfoScores : gathers properties and predicted values to be used for

makeBadRegions makeBadRegions : creates bad regions to train the software on region shape

trainingGui modifyConstValuesGUI : gui to train for region and segment scores.

editSegmentsGui editSegmentsGui : gui used to turn on/off segments

superSeggerViewer superSeggerViewer : interactive visulization of the segmented data.

superSeggerViewerGui superSeggerViewerGui : gui used to visualize the results of segmentation

SOURCE CODE

0001 function dirname = fixDir( dirname )
0002 % fixDir : adds a directory separator eg '/' at the end
0003 % of dirname if it doesn't exist
0004 % INPUT :
0005 %   dirname : String of directory name
0006 % OUTPUT :
0007 %   dirname : String of directory name with '/' at the end
0008 %
0009 % Copyright (C) 2016 Wiggins Lab
0010 % Written by Paul Wiggins.
0011 % University of Washington, 2016
0012 % This file is part of SuperSegger.
0013 %
0014 % SuperSegger is free software: you can redistribute it and/or modify
0015 % it under the terms of the GNU General Public License as published by
0016 % the Free Software Foundation, either version 3 of the License, or
0017 % (at your option) any later version.
0018 %
0019 % SuperSegger is distributed in the hope that it will be useful,
0020 % but WITHOUT ANY WARRANTY; without even the implied warranty of
0021 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
0022 % GNU General Public License for more details.
0023 %
0024 % You should have received a copy of the GNU General Public License
0025 % along with SuperSegger.  If not, see <http://www.gnu.org/licenses/>.
0026 
0027 if ~isempty( dirname )
0028     if strcmp(dirname,'.')
0029         dirname = pwd;
0030     end
0031     
0032     if dirname(end) ~= filesep
0033         dirname = [dirname,filesep];
0034     end
0035 end
0036 
0037 end

fixDir

PURPOSE

SYNOPSIS

DESCRIPTION

CROSS-REFERENCE INFORMATION

SOURCE CODE