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W3110 Unique ID: JW3540

Gene: xylH

Gene name: xylH
Strain: JW3540
Induction: 50 uM IPTG
Comment: 10A3E
Reference: PMID:16769691--ASKA Collection--Kitagawa et al.

Consensus Protein Localization:

The mean image is generated by interpolating the single cell histories onto a reference cell cycle.Time is measured relative to the cell cycle length and position is measured relative to the cell geometry. The std image is the standard deviation in intensity. The error image is the predicted error in the mean intesnity. The mean, std, and error images share a common normalization: intensity relative to the brightest pixel. The cell histories are individually corrected for protein synthesis, degredation and fluorophore bleahcing by adjust the temporal normalization to maintain a fixed areal mean intensity throughout the cell cycle.

Mean Intensity

NCell = 816

Std Intensity

NCell = 816

Error Intensity

NCell = 816

Cell Orientation Relative Intensity

Principal Component Analysis (Cell-to-Cell Variation):

Principal Component Analysis of Cell-to-Cell Variation captures the dominant modes of cell to cell variation.

Comp: 1

Power: 1

Comp: 2

Power: 0.39

Comp: 3

Power: 0.37

Comp: 4

Power: 0.28

Comp: 5

Power: 0.23

Comp: 6

Power: 0.2

Cell Splits: Subpopulation Analysis

To investigate the role of cell physiological parameter P (eg cell length) on protein localization, cells are divided into two subpopulations Pcell > Pcut and Pcell > Pcut and consensus images are computed for each. On the left hand side, each image is normalized individually. On right hand side, a common normalization scheme is used for all twelve subpopulation consensus images. On the far right, a histogram is shown for each parameter P for all complete cell cycles collected. The blue (red) curve shows the histogram for the population below (above) Pcut. The yellow curve shows the histogram generated by all fusions strains (typically 48) imaged in the imaging run.

Individual Normalization
Common Normalization
< Pcut
> Pcut
Characteristic P
< Pcut
> Pcut
Histograms

NCell = 283

NCell = 533

Cell Length

Lcut = 2.5 um

NCell = 283

NCell = 533

NCell = 321

NCell = 495

Cell-Cycle Length

Tcut = 71.3 min

NCell = 321

NCell = 495

NCell = 474

NCell = 342

Cell Birth Time

Tcut = 219.4 min

NCell = 474

NCell = 342

NCell = 419

NCell = 397

Number of

Neighbors

Ncut = 2.7 cells

NCell = 419

NCell = 397

NCell = 507

NCell = 309

Pole Age

Tcut = 2.4 divisions

NCell = 507

NCell = 309

NCell = 275

NCell = 541

Cell Fluor

Icut = 179.4 AU

NCell = 275

NCell = 541